STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104938027Ubiquitin carboxyl-terminal hydrolase 11. (988 aa)    
Predicted Functional Partners:
rnf123
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF123.
   
 0.789
usp7
Ubiquitin carboxyl-terminal hydrolase 7 isoform X1.
   
 0.662
mysm1
Histone H2A deubiquitinase MYSM1.
   
 
 0.608
LOC104934542
Baculoviral IAP repeat-containing protein 2/3.
    
 0.590
LOC109137915
Baculoviral IAP repeat-containing protein 7 isoform X1.
    
 0.590
ubb
Polyubiquitin-B isoform X1.
    
 0.582
LOC104931204
NF-kappa-B inhibitor alpha.
    
  0.556
nfkbia
NF-kappa-B inhibitor alpha.
    
  0.556
traf6
TNF receptor-associated factor 6.
    
 0.554
mrps9
28S ribosomal protein S9, mitochondrial isoform X1.
   
 
 0.544
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.