STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cxviiih2orf49Chromosome XVIII C2orf49 homolog. (196 aa)    
Predicted Functional Partners:
rtcb
TRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase).
    
 0.934
fam98b
Protein FAM98B.
   
 0.921
rtraf
RNA transcription, translation and transport factor.
    
 0.903
ddx1
ATP-dependent RNA helicase DDX1.
    
 0.893
fam98a
Protein FAM98A.
      
 0.600
zbtb8os
Protein archease.
     
 0.545
LOC104933119
Transmembrane emp24 domain-containing protein 7.
   
 
 0.518
ND4
NADH-ubiquinone oxidoreductase chain 4.
    
 
 0.490
dhx57
Putative ATP-dependent RNA helicase DHX57.
   
 0.484
mrpl19
39S ribosomal protein L19, mitochondrial.
   
 
 0.473
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.