STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104932545Chromodomain-helicase-DNA-binding protein 4 isoform X1. (1980 aa)    
Predicted Functional Partners:
RBBP4
Histone-binding protein RBBP4.
   
 0.746
ENSLCRP00005054289
annotation not available
   
 0.746
LOC104932139
Histone-binding protein RBBP4.
   
 0.746
mta2
Metastasis-associated protein MTA2 isoform X1.
   
 0.745
arid4b
AT-rich interactive domain-containing protein 4B isoform X1.
    
 0.727
arid4a
AT-rich interactive domain-containing protein 4A.
    
 0.727
kdm1a
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
   
 0.720
mta1
Metastasis-associated protein MTA1 isoform X1.
   
 0.717
mta3
Metastasis-associated protein MTA3 isoform X1.
   
 0.717
LOC104924841
Transcriptional repressor p66-alpha.
   
 0.713
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.