STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swsap1ATPase SWSAP1. (152 aa)    
Predicted Functional Partners:
zswim7
Zinc finger SWIM domain-containing protein 7.
    
 
 0.837
SPIDR
DNA repair-scaffolding protein.
    
 
 0.661
hsf2bp
Heat shock factor 2-binding protein.
      
 0.617
meiob
Meiosis-specific with OB domain-containing protein.
      
 0.599
msh4
DNA mismatch repair protein MSH4.
      
 0.590
trip13
Pachytene checkpoint protein 2 homolog.
    
 
 0.587
rad51d
DNA repair protein RAD51 homolog 4 isoform X1.
    
 
 0.561
xrcc3
DNA repair protein XRCC3.
    
 
 0.537
gps1
COP9 signalosome complex subunit 1 isoform X2.
      
 0.519
emsy
BRCA2-interacting transcriptional repressor EMSY isoform X2.
      
 0.505
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.