STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcbTRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase). (505 aa)    
Predicted Functional Partners:
ddx1
ATP-dependent RNA helicase DDX1.
   
 0.974
zbtb8os
Protein archease.
 
 0.964
rtraf
RNA transcription, translation and transport factor.
   
 0.950
fam98b
Protein FAM98B.
    
 0.937
cxviiih2orf49
Chromosome XVIII C2orf49 homolog.
    
 0.934
rtca
RNA 3'-terminal phosphate cyclase (ATP).
  
  
 0.884
rcl1
RNA 3'-terminal phosphate cyclase-like protein isoform X1.
  
  
 0.800
LOC104921849
Usher syndrome type-1C protein-binding protein 1.
  
  
 0.800
eif2s1
Eukaryotic translation initiation factor 2 subunit 1.
   
  
 0.746
MRPL58
Peptidyl-tRNA hydrolase ICT1, mitochondrial.
  
  
 0.743
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.