LOC104933999 protein (Larimichthys crocea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104933999

Adrenergic receptor alpha-2B. (527 aa)

Predicted Functional Partners:

GNG4

0.541

gng2

0.541

LOC104927313

0.512

gnb5

0.512

LOC104939455

0.463

gnas

0.463

GNAZ

0.460

LOC104933944

0.451

gng10

0.444

LOC104928990

0.444

Your Current Organism:

Larimichthys crocea

NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNAZ	GNG4	ENSLCRP00005036485	ENSLCRP00005007812	Guanine nucleotide-binding protein G(z) subunit alpha.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	0.760
GNAZ	LOC104927313	ENSLCRP00005036485	ENSLCRP00005046068	Guanine nucleotide-binding protein G(z) subunit alpha.	Guanine nucleotide-binding protein subunit beta-5b-like.	0.757
GNAZ	LOC104928990	ENSLCRP00005036485	ENSLCRP00005029361	Guanine nucleotide-binding protein G(z) subunit alpha.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13.	0.728
GNAZ	LOC104933944	ENSLCRP00005036485	ENSLCRP00005060222	Guanine nucleotide-binding protein G(z) subunit alpha.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2.	0.757
GNAZ	LOC104933999	ENSLCRP00005036485	ENSLCRP00005033906	Guanine nucleotide-binding protein G(z) subunit alpha.	Adrenergic receptor alpha-2B.	0.460
GNAZ	LOC104939455	ENSLCRP00005036485	ENSLCRP00005005908	Guanine nucleotide-binding protein G(z) subunit alpha.	Guanine nucleotide-binding protein G(olf) subunit alpha.	0.499
GNAZ	gnas	ENSLCRP00005036485	ENSLCRP00005028999	Guanine nucleotide-binding protein G(z) subunit alpha.	Guanine nucleotide-binding protein G(s) subunit alpha.	0.499
GNAZ	gnb5	ENSLCRP00005036485	ENSLCRP00005064463	Guanine nucleotide-binding protein G(z) subunit alpha.	Guanine nucleotide-binding protein subunit beta-5.	0.757
GNAZ	gng10	ENSLCRP00005036485	ENSLCRP00005015304	Guanine nucleotide-binding protein G(z) subunit alpha.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	0.715
GNAZ	gng2	ENSLCRP00005036485	ENSLCRP00005041608	Guanine nucleotide-binding protein G(z) subunit alpha.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2.	0.760
GNG4	GNAZ	ENSLCRP00005007812	ENSLCRP00005036485	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Guanine nucleotide-binding protein G(z) subunit alpha.	0.760
GNG4	LOC104927313	ENSLCRP00005007812	ENSLCRP00005046068	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Guanine nucleotide-binding protein subunit beta-5b-like.	0.818
GNG4	LOC104928990	ENSLCRP00005007812	ENSLCRP00005029361	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13.	0.558
GNG4	LOC104933944	ENSLCRP00005007812	ENSLCRP00005060222	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2.	0.611
GNG4	LOC104933999	ENSLCRP00005007812	ENSLCRP00005033906	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Adrenergic receptor alpha-2B.	0.541
GNG4	LOC104939455	ENSLCRP00005007812	ENSLCRP00005005908	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Guanine nucleotide-binding protein G(olf) subunit alpha.	0.840
GNG4	gnas	ENSLCRP00005007812	ENSLCRP00005028999	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Guanine nucleotide-binding protein G(s) subunit alpha.	0.840
GNG4	gnb5	ENSLCRP00005007812	ENSLCRP00005064463	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	Guanine nucleotide-binding protein subunit beta-5.	0.818
LOC104927313	GNAZ	ENSLCRP00005046068	ENSLCRP00005036485	Guanine nucleotide-binding protein subunit beta-5b-like.	Guanine nucleotide-binding protein G(z) subunit alpha.	0.757
LOC104927313	GNG4	ENSLCRP00005046068	ENSLCRP00005007812	Guanine nucleotide-binding protein subunit beta-5b-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.	0.818