STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhx33ATP-dependent RNA helicase DHX33. (681 aa)    
Predicted Functional Partners:
cdc40
Pre-mRNA-processing factor 17.
   
 0.928
slu7
Pre-mRNA-processing factor SLU7.
   
 0.919
cwc22
Pre-mRNA-splicing factor CWC22 homolog isoform X1.
   
 0.915
ENSLCRP00005029230
U3 small nucleolar RNA-associated protein 14 homolog A isoform X1.
   
 0.911
syf2
Pre-mRNA-splicing factor SYF2.
    
 0.904
ddx49
DEAD-box helicase 49.
   
 0.903
yju2
YJU2 splicing factor homolog.
    
 0.885
utp3
UTP3 small subunit processome component.
   
 0.877
utp25
U3 small nucleolar RNA-associated protein 25.
   
 0.872
prpf18
Pre-mRNA-splicing factor 18 isoform X2.
   
 0.867
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.