STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubbPolyubiquitin-B isoform X1. (457 aa)    
Predicted Functional Partners:
usp14
Ubiquitin carboxyl-terminal hydrolase 14.
   
 0.997
psmb2
Proteasome subunit beta type-2.
   
 0.996
psmd14
26S proteasome non-ATPase regulatory subunit 14.
   
 0.996
psmd3
26S proteasome non-ATPase regulatory subunit 3 isoform X1.
   
 0.996
rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
  
 
0.995
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1.
    
 0.994
LOC104937324
Ubiquitin.
  
 
  
0.987
mysm1
Histone H2A deubiquitinase MYSM1.
   
 0.980
ubxn7
UBX domain-containing protein 7.
    
 0.977
psmd2
26S proteasome non-ATPase regulatory subunit 2.
   
 0.974
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.