STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sclySelenocysteine lyase isoform X1. (451 aa)    
Predicted Functional Partners:
fxn
Frataxin, mitochondrial isoform X1.
   
 0.988
LOC104934686
Iron-sulfur cluster assembly enzyme ISCU, mitochondrial.
  
 0.984
iscu
Iron-sulfur cluster assembly enzyme ISCU, mitochondrial.
  
 0.984
ENSLCRP00005023660
annotation not available
   
 0.974
sephs1
Selenide, water dikinase 1.
    
 0.961
LOC104933750
Selenide, water dikinase 2.
    
 0.959
mocos
Molybdenum cofactor sulfurtransferase.
    
 0.930
LOC104921093
Thioredoxin reductase 2, mitochondrial isoform X1.
  
 0.919
LOC104933216
Thioredoxin reductase 1, cytoplasmic isoform X1.
  
 0.918
TXNRD1
Thioredoxin reductase 1, cytoplasmic isoform X1.
  
 0.918
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.