STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104934422F-box only protein 40 isoform X1. (723 aa)    
Predicted Functional Partners:
fau
Ubiquitin-like protein fubi and ribosomal protein S30.
   
  0.778
skp1
S-phase kinase-associated protein 1.
    
 0.625
cul1
Cullin-1 isoform X1.
    
 0.623
LOC104918663
E3 SUMO-protein ligase RanBP2 isoform X1.
   
 
 0.565
LOC104932910
NEDD8.
   
  0.551
LOC104931181
Ubiquitin-like protein Nedd8.
   
  0.551
gle1
Nucleoporin GLE1.
    
 0.515
LOC104924328
COMM domain-containing protein 4.
    
 0.510
RPS19
Small subunit ribosomal protein S19e.
   
 
 0.456
rps24
40S ribosomal protein S24 isoform X2.
   
 
 0.456
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.