STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf18Pre-mRNA-splicing factor 18 isoform X2. (360 aa)    
Predicted Functional Partners:
slu7
Pre-mRNA-processing factor SLU7.
  
 0.998
snrnp200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
    
 
 0.993
cdc5l
Cell division cycle 5-like protein.
   
 
 0.992
bud31
Bud site selection protein 31.
    
 
 0.989
cdc40
Pre-mRNA-processing factor 17.
   
 0.970
cwc22
Pre-mRNA-splicing factor CWC22 homolog isoform X1.
   
 0.953
dhx38
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1.
   
 0.949
cwc25
Pre-mRNA-splicing factor CWC25 homolog.
    
 0.942
yju2
YJU2 splicing factor homolog.
    
 0.941
syf2
Pre-mRNA-splicing factor SYF2.
   
 0.940
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.