STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cntn1Contactin 1. (1065 aa)    
Predicted Functional Partners:
NRCAM
Neuronal cell adhesion molecule isoform X8.
    
0.950
LOC104925414
Contactin-1a isoform X1.
  
  
 
0.902
cntnap1
Contactin associated protein 1.
   
 0.882
ptprg
Receptor-type tyrosine-protein phosphatase gamma.
    
 0.658
LOC104933232
Receptor-type tyrosine-protein phosphatase gamma isoform X1.
    
 0.658
LOC104939324
Neurofascin.
    
0.592
nfasc
Neurofascin.
    
0.590
LOC104932346
Amyloid-beta A4 protein isoform X1.
   
 
 0.553
APP
Amyloid-beta A4 protein isoform X1.
   
 
 0.553
chl1
Cell adhesion molecule L1 like.
    
0.528
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.