STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrp36Ribosomal RNA processing protein 36 homolog. (348 aa)    
Predicted Functional Partners:
abt1
Activator of basal transcription 1 isoform X2.
   
 
 0.991
utp3
UTP3 small subunit processome component.
   
 0.991
utp25
U3 small nucleolar RNA-associated protein 25.
   
 0.991
rrp9
U3 small nucleolar RNA-interacting protein 2 isoform X1.
   
 0.990
utp6
UTP6 small subunit processome component.
   
 0.980
LOC104922111
Uromodulin.
   
 0.978
krr1
KRR1 small subunit processome component homolog.
   
 0.978
utp18
UTP18 small subunit processome component.
   
 0.977
ddx10
Probable ATP-dependent RNA helicase DDX10.
   
 0.969
rrp7a
Ribosomal RNA-processing protein 7 homolog A.
   
 
 0.964
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.