STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104917806Protein Shroom1 isoform X1. (1605 aa)    
Predicted Functional Partners:
ENSLCRP00005027320
Shroom family member 4.
      
 0.501
LOC104926265
Uncharacterized protein LOC104926265.
  
     0.487
gap43
Neuromodulin.
  
     0.484
LOC113747811
Synaptopodin 2-like protein.
  
     0.443
LOC104927578
Pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1.
  
     0.443
LOC104924673
Trichohyalin isoform X2.
  
     0.433
ncoa6
Nuclear receptor coactivator 6.
  
     0.432
insyn2b
Protein INSYN2B isoform X1.
  
     0.432
LOC104930049
SMC5-SMC6 complex localization factor protein 2-like isoform X1.
  
     0.431
LOC104938736
Uncharacterized protein LOC104938736 isoform X1.
  
     0.427
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.