STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cxh6orf120UPF0669 protein C6orf120 homolog. (124 aa)    
Predicted Functional Partners:
tmub1
Transmembrane and ubiquitin-like domain-containing protein 1.
      
 0.603
tmem259
Membralin isoform X1.
      
 0.591
LOC104928258
E3 ubiquitin-protein ligase RNF170.
      
 0.589
tmub2
Transmembrane and ubiquitin-like domain-containing protein 2.
      
 0.573
tmco1
Calcium load-activated calcium channel.
      
 0.571
tmbim6
Bax inhibitor 1.
      
 0.521
slc30a6
Solute carrier family 30 (zinc transporter), member 6.
   
    0.446
LOC104930410
Erlin-1.
    
 
 0.441
LOC104924984
Erlin-2.
    
 
 0.441
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.