STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smarcad1annotation not available (1054 aa)    
Predicted Functional Partners:
msh2
DNA mismatch repair protein MSH2.
   
 
 0.841
exo1
Exonuclease 1.
    
 
 0.814
dna2
DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1.
    
 
 0.700
trim33
E3 ubiquitin-protein ligase TRIM33 isoform X4.
   
 
 0.667
LOC104921032
Transcription intermediary factor 1-alpha-like.
   
 
 0.667
LOC104933737
Transcription intermediary factor 1-alpha isoform X1.
   
 
 0.667
hmg20a
High mobility group protein 20A isoform X1.
   
  
 0.581
tp53bp1
Tumor suppressor p53-binding protein 1.
   
 
 0.581
topbp1
DNA topoisomerase 2-binding protein 1.
   
 
 0.574
recql4
ATP-dependent DNA helicase Q4 isoform X1.
   
 
 0.572
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.