STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rxylt1Alpha-dystroglycan beta1,4-xylosyltransferase. (440 aa)    
Predicted Functional Partners:
b4gat1
Beta-1,4-glucuronyltransferase 1 isoform X1.
   
 
 0.966
fkrp
Fukutin-related protein.
     
 0.966
fktn
LOW QUALITY PROTEIN: fukutin.
   
 
 0.725
b3galnt2
UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2.
   
  
 0.685
Pomk
Protein O-mannose kinase.
      
 0.682
pomgnt2
Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2.
      
 0.681
pomt1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
   
  
 0.673
pomgnt1
Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1.
    
 
 0.661
LOC104935585
D-ribitol-5-phosphate cytidylyltransferase isoform X2.
  
   
 0.645
pomt2
Dolichyl-phosphate-mannose-protein mannosyltransferase.
   
  
 0.629
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.