STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109142504Rhombotin-1. (155 aa)    
Predicted Functional Partners:
LOC104924281
LIM domain-binding protein 1 isoform X1.
    
 0.848
LOC104922276
LIM domain-binding protein 1 isoform X1.
    
 0.848
ldb2
LIM domain binding 2.
    
 0.834
LOC104936600
T-cell acute lymphocytic leukemia protein 1 isoform X2.
    
 0.640
ENSLCRP00005018168
T-cell acute lymphocytic leukemia protein 1 homolog.
    
 0.640
ENSLCRP00005042225
annotation not available
    
 0.640
LOC104939432
Endothelial transcription factor GATA-2.
    
 0.620
gata3
Trans-acting T-cell-specific transcription factor GATA-3 isoform X1.
    
 0.613
cbfb
Core-binding factor subunit beta isoform X1.
    
  0.578
LOC104933019
GATA-binding factor 2 isoform X2.
    
 0.554
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.