STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104933875Eukaryotic translation initiation factor 5A-1. (156 aa)    
Predicted Functional Partners:
fau
Ubiquitin-like protein fubi and ribosomal protein S30.
   
 
 0.997
rps18
Ribosomal protein S18.
  
 
 0.990
rps3
40S ribosomal protein S3.
   
 
 0.990
rps11
Small subunit ribosomal protein S11e.
   
 
 0.990
rpl23
Large subunit ribosomal protein L23e.
   
 
 0.990
rps15
Small subunit ribosomal protein S15e.
   
 
 0.990
rpl35
Large subunit ribosomal protein L35e.
   
 
 0.989
rpl11
Large subunit ribosomal protein L11e.
   
 
 0.987
rps6
Small subunit ribosomal protein S6e.
   
 
 0.987
rpl23a
Large subunit ribosomal protein L23Ae.
   
 
 0.985
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.