STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aggf1Angiogenic factor with G patch and FHA domains 1 isoform X1. (798 aa)    
Predicted Functional Partners:
ddx10
Probable ATP-dependent RNA helicase DDX10.
    
 0.661
nol6
U3 small nucleolar RNA-associated protein 22.
   
 
 0.639
utp6
UTP6 small subunit processome component.
   
 
 0.635
utp3
UTP3 small subunit processome component.
   
   0.620
bysl
Essential nuclear protein 1.
    
 
 0.619
rrp36
Ribosomal RNA processing protein 36 homolog.
   
   0.615
nom1
Nucleolar MIF4G domain-containing protein 1.
   
   0.610
nop14
Nucleolar protein 14.
    
   0.609
imp3
U3 small nucleolar ribonucleoprotein protein IMP3.
    
   0.609
utp25
U3 small nucleolar RNA-associated protein 25.
    
   0.609
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.