STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ush1cUSH1 protein network component harmonin. (1037 aa)    
Predicted Functional Partners:
cdh23
Cadherin 23.
   
 
 0.919
LOC104925058
Usher syndrome type-1G protein homolog isoform X1.
    
 0.898
anks4b
Ankyrin repeat and SAM domain-containing protein 4B.
    
 0.898
ush1g
Usher syndrome type-1G protein isoform X1.
    
 0.898
cdhr2
Cadherin-related family member 2.
   
 
 0.872
Adgrv1
Adhesion G-protein coupled receptor V1.
    
 
 0.703
LOC104919197
Unconventional myosin-VIIa.
   
 0.700
myo7a
Unconventional myosin-VIIa.
   
 0.700
irx3
Iroquois-class homeodomain protein IRX-3.
   
  
 0.686
sall4
Sal-like protein 4.
      
 0.672
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.