STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabepkRab9 effector protein with kelch motifs isoform X1. (351 aa)    
Predicted Functional Partners:
mrc2
C-type mannose receptor 2.
    
 
 0.832
ttc8
Tetratricopeptide repeat protein 8.
      
 0.830
aldh6a1
Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase.
      
 0.783
vamp3
Vesicle-associated membrane protein 3.
     
 0.760
ckap5
Cytoskeleton-associated protein 5 isoform X1.
    
 
 0.682
Cenpe
Centromere-associated protein E.
    
 
 0.619
kif17
Kinesin family member 17.
    
 
 0.619
stx8
LOW QUALITY PROTEIN: syntaxin-8.
     
 0.616
timm21
Mitochondrial import inner membrane translocase subunit Tim21 isoform X1.
   
    0.611
rhobtb3
Rho-related BTB domain-containing protein 3.
   
 0.611
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.