STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104927500WD repeat-containing protein 20. (683 aa)    
Predicted Functional Partners:
wdr48
WD repeat-containing protein 48.
    
 0.943
LOC104938206
Ubiquitin carboxyl-terminal hydrolase 12 isoform X1.
   
 0.811
ENSLCRP00005041283
Ubiquitin specific peptidase 46.
   
 0.811
USP46
Ubiquitin carboxyl-terminal hydrolase 12/46.
   
 0.811
usp12
Ubiquitin carboxyl-terminal hydrolase 12/46.
   
 0.811
sympk
Symplekin.
 
  
 0.746
LOC109136903
Uncharacterized protein LOC109136903.
   
 0.723
ENSLCRP00005041355
annotation not available
   
 0.723
ENSLCRP00005041381
annotation not available
   
 0.723
usp1
Ubiquitin carboxyl-terminal hydrolase 1 isoform X1.
   
 0.696
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.