STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104929443Ubiquitin carboxyl-terminal hydrolase 43-like isoform X1. (1213 aa)    
Predicted Functional Partners:
ubb
Polyubiquitin-B isoform X1.
    
 0.645
mysm1
Histone H2A deubiquitinase MYSM1.
   
 
 0.608
usp10
Ubiquitin carboxyl-terminal hydrolase 10 isoform X1.
    
 0.588
traf6
TNF receptor-associated factor 6.
    
 0.554
mrps9
28S ribosomal protein S9, mitochondrial isoform X1.
   
 
 0.544
mrpl3
39S ribosomal protein L3, mitochondrial.
   
 
 0.541
mrpl11
39S ribosomal protein L11, mitochondrial.
   
 
 0.539
rnf123
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF123.
   
 0.535
mrpl21
39S ribosomal protein L21, mitochondrial.
   
 
 0.529
yars1
Tyrosine--tRNA ligase, cytoplasmic.
   
  
 0.525
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.