LOC109140357 protein (Larimichthys crocea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109140357

Phosphoribosyltransferase domain-containing protein 1-like. (220 aa)

Predicted Functional Partners:

gart

0.808

adsl

0.778

atp5po

0.685

ATP6

0.661

wdr90

0.635

LOC104931438

0.591

LOC104919744

0.591

atp5f1c

0.566

ENSLCRP00005035228

0.566

LOC104927461

0.550

Your Current Organism:

Larimichthys crocea

NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6	ENSLCRP00005035228	ENSLCRP00005000007	ENSLCRP00005035228	F-type H+-transporting ATPase subunit a.	ATP synthase F1 subunit gamma.	0.998
ATP6	LOC109140357	ENSLCRP00005000007	ENSLCRP00005044429	F-type H+-transporting ATPase subunit a.	Phosphoribosyltransferase domain-containing protein 1-like.	0.661
ATP6	atp5f1c	ENSLCRP00005000007	ENSLCRP00005034949	F-type H+-transporting ATPase subunit a.	ATP synthase subunit gamma, mitochondrial isoform X2.	0.998
ATP6	atp5po	ENSLCRP00005000007	ENSLCRP00005043911	F-type H+-transporting ATPase subunit a.	F-type H+-transporting ATPase subunit O.	0.999
ENSLCRP00005035228	ATP6	ENSLCRP00005035228	ENSLCRP00005000007	ATP synthase F1 subunit gamma.	F-type H+-transporting ATPase subunit a.	0.998
ENSLCRP00005035228	LOC109140357	ENSLCRP00005035228	ENSLCRP00005044429	ATP synthase F1 subunit gamma.	Phosphoribosyltransferase domain-containing protein 1-like.	0.566
ENSLCRP00005035228	atp5po	ENSLCRP00005035228	ENSLCRP00005043911	ATP synthase F1 subunit gamma.	F-type H+-transporting ATPase subunit O.	0.998
LOC104919744	LOC104931438	ENSLCRP00005046214	ENSLCRP00005007358	Ribonucleoside-diphosphate reductase large subunit.	Ribonucleoside-diphosphate reductase large subunit.	0.906
LOC104919744	LOC109140357	ENSLCRP00005046214	ENSLCRP00005044429	Ribonucleoside-diphosphate reductase large subunit.	Phosphoribosyltransferase domain-containing protein 1-like.	0.591
LOC104919744	adsl	ENSLCRP00005046214	ENSLCRP00005020698	Ribonucleoside-diphosphate reductase large subunit.	Adenylosuccinate lyase.	0.592
LOC104919744	gart	ENSLCRP00005046214	ENSLCRP00005045334	Ribonucleoside-diphosphate reductase large subunit.	Trifunctional purine biosynthetic protein adenosine-3 isoform X1.	0.789
LOC104927461	LOC109140357	ENSLCRP00005002303	ENSLCRP00005044429	AFG3-like protein 1 isoform X1.	Phosphoribosyltransferase domain-containing protein 1-like.	0.550
LOC104931438	LOC104919744	ENSLCRP00005007358	ENSLCRP00005046214	Ribonucleoside-diphosphate reductase large subunit.	Ribonucleoside-diphosphate reductase large subunit.	0.906
LOC104931438	LOC109140357	ENSLCRP00005007358	ENSLCRP00005044429	Ribonucleoside-diphosphate reductase large subunit.	Phosphoribosyltransferase domain-containing protein 1-like.	0.591
LOC104931438	adsl	ENSLCRP00005007358	ENSLCRP00005020698	Ribonucleoside-diphosphate reductase large subunit.	Adenylosuccinate lyase.	0.592
LOC104931438	gart	ENSLCRP00005007358	ENSLCRP00005045334	Ribonucleoside-diphosphate reductase large subunit.	Trifunctional purine biosynthetic protein adenosine-3 isoform X1.	0.789
LOC109140357	ATP6	ENSLCRP00005044429	ENSLCRP00005000007	Phosphoribosyltransferase domain-containing protein 1-like.	F-type H+-transporting ATPase subunit a.	0.661
LOC109140357	ENSLCRP00005035228	ENSLCRP00005044429	ENSLCRP00005035228	Phosphoribosyltransferase domain-containing protein 1-like.	ATP synthase F1 subunit gamma.	0.566
LOC109140357	LOC104919744	ENSLCRP00005044429	ENSLCRP00005046214	Phosphoribosyltransferase domain-containing protein 1-like.	Ribonucleoside-diphosphate reductase large subunit.	0.591
LOC109140357	LOC104927461	ENSLCRP00005044429	ENSLCRP00005002303	Phosphoribosyltransferase domain-containing protein 1-like.	AFG3-like protein 1 isoform X1.	0.550