STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsd1Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific. (2589 aa)    
Predicted Functional Partners:
eed
Polycomb protein EED.
   
 0.699
plod1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 isoform X1.
    
 0.694
plod2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1.
    
 0.694
camkmt
Calmodulin-lysine N-methyltransferase.
     
 0.682
mre11
Double-strand break repair protein MRE11.
   
 0.647
huwe1
E3 ubiquitin-protein ligase HUWE1 isoform X1.
   
  
 0.637
nup98
Nuclear pore complex protein Nup98-Nup96 isoform X1.
   
 
 0.617
smg1
Serine/threonine-protein kinase SMG1 isoform X2.
   
 0.603
rbbp5
Retinoblastoma-binding protein 5 isoform X1.
    
 0.601
ash2l
Set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X1.
    
 0.600
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.