STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eml5Echinoderm microtubule-associated protein-like 5 isoform X1. (1972 aa)    
Predicted Functional Partners:
mad2l1
Mitotic spindle assembly checkpoint protein MAD2A.
   
 0.703
LOC104918663
E3 SUMO-protein ligase RanBP2 isoform X1.
   
 0.681
ift140
Intraflagellar transport protein 140 homolog isoform X1.
    
 0.670
mad1l1
Mitotic arrest deficient 1 like 1.
    
 0.661
cpsf1
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.646
taf12
Transcription initiation factor TFIID subunit 12.
   
 0.635
LOC104932854
Transcription initiation factor TFIID subunit 9.
    
 0.631
taf10
Transcription initiation factor TFIID subunit 10.
    
 0.629
taf2
Transcription initiation factor TFIID subunit 2.
    
 0.628
cdc16
Cell division cycle protein 16 homolog.
   
 0.626
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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