STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
txnl1Thioredoxin-like protein 1. (289 aa)    
Predicted Functional Partners:
psmd14
26S proteasome non-ATPase regulatory subunit 14.
   
 
 0.953
itsn2
Intersectin 2.
     
 0.943
LOC104920145
Intersectin-2.
     
 0.943
cops5
COP9 signalosome complex subunit 5.
   
 
 0.839
psmc3
26S proteasome regulatory subunit 6A.
   
   0.668
Glrx3
Glutaredoxin-3.
   
  
0.665
mysm1
Histone H2A deubiquitinase MYSM1.
   
 
 0.662
mpnd
MPN domain-containing protein isoform X1.
   
 
 0.656
Brcc3
BRCA1/BRCA2-containing complex subunit 3.
   
 
 0.656
tmx1
Thioredoxin-related transmembrane protein 1.
    
 0.643
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.