STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nop56Nucleolar protein 56. (573 aa)    
Predicted Functional Partners:
fbl
RRNA 2'-O-methyltransferase fibrillarin.
   
 0.999
rrp9
U3 small nucleolar RNA-interacting protein 2 isoform X1.
   
 0.999
bms1
BMS1 ribosome biogenesis factor.
   
 
 0.999
nop58
Nucleolar protein 58 isoform X1.
  
0.999
snu13
U4/U6 small nuclear ribonucleoprotein SNU13.
   
 0.999
wdr43
U3 small nucleolar RNA-associated protein 5.
   
 0.999
wdr46
U3 small nucleolar RNA-associated protein 7.
   
 
 0.998
wdr36
U3 small nucleolar RNA-associated protein 21.
   
 
 0.998
utp15
UTP15 small subunit processome component.
   
 0.998
dkc1
H/ACA ribonucleoprotein complex subunit DKC1.
   
 
 0.998
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.