STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl13bADP-ribosylation factor-like protein 13B isoform X2. (402 aa)    
Predicted Functional Partners:
inpp5e
72 kDa inositol polyphosphate 5-phosphatase.
     
 0.850
pde6d
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta.
     
 0.849
ift88
Intraflagellar transport 88.
    
 0.842
cog8
Conserved oligomeric Golgi complex subunit 8.
   
 0.774
ift22
Intraflagellar transport protein 22 homolog.
    
 
 0.763
cog6
Conserved oligomeric Golgi complex subunit 6.
    
 0.717
RIC1
RAB6A-GEF complex partner protein 1.
    
 0.711
ift81
Intraflagellar transport protein 81 homolog.
    
 
 0.710
ift46
Intraflagellar transport protein 46 homolog.
    
 
 0.697
cplane2
Ciliogenesis and planar polarity effector 2.
    
 0.697
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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