STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nup188Nuclear pore complex protein Nup188. (1788 aa)    
Predicted Functional Partners:
nup93
Nuclear pore complex protein Nup93.
   
 0.999
LOC104918663
E3 SUMO-protein ligase RanBP2 isoform X1.
   
 0.991
nup205
Nuclear pore complex protein Nup205.
   
 0.990
nup155
Nuclear pore complex protein Nup155.
   
 0.987
nup85
Nuclear pore complex protein Nup85 isoform X2.
   
 0.986
aaas
Aladin isoform X1.
   
 0.980
NUP54
Nucleoporin 54.
    
 0.975
nup35
Nuclear pore complex protein Nup53.
    
 0.973
ndc1
Nucleoporin NDC1 isoform X1.
    
 0.971
nup107
Nuclear pore complex protein Nup107.
   
 0.970
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.