STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abtb1Ankyrin repeat and BTB/POZ domain-containing protein 1. (475 aa)    
Predicted Functional Partners:
LOC104922247
Valyl-tRNA synthetase.
   
 
 0.854
ap4b1
AP-4 complex subunit beta-1 isoform X2.
    
 0.669
tfip11
Tuftelin-interacting protein 11 isoform X1.
    
 
 0.639
med27
Mediator of RNA polymerase II transcription subunit 27.
   
 0.628
ltv1
Protein LTV1 homolog.
    
 
 0.622
dohh
Deoxyhypusine monooxygenase.
  
  
 0.615
taf5l
TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L.
    
 0.613
sf3b5
Splicing factor 3B subunit 5.
      
 0.606
wdyhv1
Protein N-terminal glutamine amidohydrolase isoform X1.
      
 0.604
ube4a
Ubiquitin conjugation factor E4 A isoform X1.
      
 0.597
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
Server load: low (28%) [HD]