STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
peli1E3 ubiquitin-protein ligase pellino homolog 1. (427 aa)    
Predicted Functional Partners:
LOC104935488
Interleukin-1 receptor-associated kinase 1.
    
 0.812
irak4
Interleukin-1 receptor-associated kinase 4.
    
 0.766
LOC104919927
Ubiquitin-conjugating enzyme E2 variant 1-like isoform X2.
    
 0.737
traf6
TNF receptor-associated factor 6.
   
 0.718
ripk1
Receptor-interacting serine/threonine-protein kinase 1 isoform X1.
    
 0.601
ube2n
Ubiquitin-conjugating enzyme E2 N.
    
 0.535
LOC104932591
Ubiquitin-conjugating enzyme E2 N isoform X2.
    
 0.535
LOC104936986
Receptor-interacting serine/threonine-protein kinase 3.
    
 0.491
LOC104918127
Ankyrin repeat and protein kinase domain-containing protein 1 isoform X1.
    
 0.491
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
    
 0.463
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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