STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104922246Endonuclease domain-containing 1 protein. (462 aa)    
Predicted Functional Partners:
fancm
Fanconi anemia group M protein isoform X1.
    
 0.591
pold2
DNA polymerase delta subunit 2.
    
 0.586
mus81
Crossover junction endonuclease MUS81.
    
 0.556
pold1
DNA polymerase delta catalytic subunit.
   
 0.544
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.517
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.510
ddx20
Probable ATP-dependent RNA helicase DDX20.
   
 0.499
LOC104938715
Uncharacterized protein LOC104938715 isoform X1.
  
  0.488
LOC104939431
Survival motor neuron protein.
    
 0.487
LOC104922807
Survival motor neuron protein 1.
    
 0.487
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.