STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neurod1Neurogenic differentiation factor 1. (353 aa)    
Predicted Functional Partners:
bdnf
Brain-derived neurotrophic factor isoform X4.
      
 0.580
dcx
Neuronal migration protein doublecortin.
      
 0.569
nkx6-1
Homeobox protein Nkx-6.1.
   
  
 0.514
LOC104939213
Homeobox protein Nkx-2.2a.
   
 0.496
LOC104919299
Homeobox protein Nkx-2.2a isoform X1.
   
 0.496
elavl3
ELAV-like protein 3 isoform X1.
   
  
 0.490
LOC104931659
Homeobox protein OTX2.
   
  
 0.487
ENSLCRP00005008311
Hairy and enhancer of split 5.
   
 0.453
LOC104926441
Hairy and enhancer of split 5.
   
 0.453
gart
Trifunctional purine biosynthetic protein adenosine-3 isoform X1.
   
  
 0.439
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.