STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fjx1Four-jointed box protein 1. (427 aa)    
Predicted Functional Partners:
LOC113744302
Protocadherin Fat 3-like.
   
 
 0.691
fat3
Protocadherin Fat 3 isoform X1.
   
 
 0.691
fam20b
Glycosaminoglycan xylosylkinase.
      
 0.613
commd9
COMM domain containing 9.
      
 0.594
gask1a
Protein FAM198A isoform X1.
      
 0.591
fat2
Protocadherin Fat 1/2/3.
   
 
 0.590
fat1
Protocadherin Fat 1 isoform X3.
   
 
 0.590
TANC2
Protein TANC2 isoform X1.
      
 0.577
ENSLCRP00005019548
annotation not available
   
 
 0.571
fat4
Protocadherin Fat 4.
   
 
 0.571
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.