STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam98bProtein FAM98B. (383 aa)    
Predicted Functional Partners:
ddx1
ATP-dependent RNA helicase DDX1.
   
 0.948
rtraf
RNA transcription, translation and transport factor.
    
 0.947
rtcb
TRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase).
    
 0.937
cxviiih2orf49
Chromosome XVIII C2orf49 homolog.
   
 0.921
UNC79
Protein unc-79 homolog isoform X8.
    
 0.789
trpt1
TRNA 2'-phosphotransferase 1.
      
 0.635
zbtb8os
Protein archease.
    
 0.634
kdm6a
Lysine-specific demethylase 6A isoform X1.
    
 0.632
LOC104937847
Lysine-specific demethylase 6A isoform X1.
    
 0.632
LOC104918663
E3 SUMO-protein ligase RanBP2 isoform X1.
    
 0.593
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.