STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmod1Tropomodulin-1 isoform X1. (429 aa)    
Predicted Functional Partners:
neb
Nebulin-like.
   
 0.789
LOC104929822
Myosin light chain 1, skeletal muscle isoform.
   
 
 0.693
LOC104929226
Troponin C, skeletal muscle isoform X1.
   
 
 0.555
LOC104931962
Troponin I, slow skeletal muscle.
   
 
 0.511
LOC104918387
Troponin I, slow skeletal muscle.
   
 
 0.511
actn3
Actinin alpha 2/3.
   
 
 0.498
ACTN4
Alpha-actinin-4 isoform X1.
   
 
 0.498
actn1
Alpha-actinin-1 isoform X1.
   
 
 0.498
LOC104919529
Alpha-actinin-2 isoform X1.
   
 
 0.498
TNNI2
Troponin I, fast skeletal muscle.
   
 
 0.482
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.