STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104930410Erlin-1. (344 aa)    
Predicted Functional Partners:
sel1l
Protein sel-1 homolog 1.
     
 0.673
rnf185
E3 ubiquitin-protein ligase RNF185.
   
 0.669
RNF5
E3 ubiquitin-protein ligase RNF5.
   
 0.669
derl1
Derlin-1.
    
 0.638
tmub1
Transmembrane and ubiquitin-like domain-containing protein 1.
    
 
 0.637
LOC104928258
E3 ubiquitin-protein ligase RNF170.
    
 
 0.605
ubb
Polyubiquitin-B isoform X1.
    
 0.603
LOC104924984
Erlin-2.
  
  
 
0.594
alg11
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase.
   
    0.549
os9
Protein OS-9.
     
 0.548
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.