STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sub1Activated RNA polymerase II transcriptional coactivator p15. (140 aa)    
Predicted Functional Partners:
sympk
Symplekin.
    
 
 0.933
Tma7
Translation machinery-associated protein 7.
   
    0.754
gtf2b
Transcription initiation factor TFIIB.
   
 
 0.712
C11orf58
Small acidic protein.
   
    0.613
pomp
Proteasome maturation protein.
   
  
 0.591
arl6ip4
ADP-ribosylation factor-like protein 6-interacting protein 4.
      
 0.573
supt5h
Transcription elongation factor SPT5 isoform X1.
    
 
 0.563
ssbp1
Single-stranded DNA-binding protein, mitochondrial.
   
  
 0.528
cstf2
Cleavage stimulation factor subunit 2 isoform X1.
   
 
 0.508
cstf3
Cleavage stimulation factor subunit 3.
      
 0.504
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.