STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1. (441 aa)    
Predicted Functional Partners:
pcf11
Pre-mRNA cleavage complex 2 protein Pcf11 isoform X1.
    
 0.999
cstf2
Cleavage stimulation factor subunit 2 isoform X1.
   
 0.978
cstf3
Cleavage stimulation factor subunit 3.
    
 0.966
LOC104937414
Pre-mRNA 3'-end-processing factor FIP1 isoform X1.
    
 0.961
cpsf4
Cleavage and polyadenylation specificity factor subunit 4.
    
 0.932
gtf3c3
General transcription factor 3C polypeptide 3 (transcription factor C subunit 4).
    
 
 0.929
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.916
cpsf1
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.910
LOC104938536
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.878
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.878
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.