STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl139S ribosomal protein L1, mitochondrial. (325 aa)    
Predicted Functional Partners:
fau
Ubiquitin-like protein fubi and ribosomal protein S30.
   
 0.999
mrpl11
39S ribosomal protein L11, mitochondrial.
  
 
 0.997
fancm
Fanconi anemia group M protein isoform X1.
    
 0.995
rpl23a
Large subunit ribosomal protein L23Ae.
  
 0.992
rplp0
60S acidic ribosomal protein P0 isoform X1.
  
 0.992
rpl35
Large subunit ribosomal protein L35e.
  
 0.992
mrpl22
39S ribosomal protein L22, mitochondrial.
  
 0.992
rpl13
Large subunit ribosomal protein L13e.
   
 0.991
mrpl4
39S ribosomal protein L4, mitochondrial.
  
 0.991
mrpl19
39S ribosomal protein L19, mitochondrial.
  
 
 0.990
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.