STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pygo2Pygopus homolog 2 isoform X1. (593 aa)    
Predicted Functional Partners:
LOC104928105
Catenin beta 1.
   
 0.782
mysm1
Histone H2A deubiquitinase MYSM1.
   
 0.769
actl6a
Actin-like protein 6A isoform X2.
    
 0.764
lef1
Lymphoid enhancer-binding factor 1 isoform X1.
     
 0.760
bcl9
B-cell CLL/lymphoma 9 protein.
    
 0.750
LOC104934904
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.
   
 0.715
LOC104928041
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.
   
 0.715
LOC104920524
Protein polybromo-1 isoform X1.
    
 0.695
LOC104928127
Protein polybromo-1-like isoform X1.
    
 0.695
smarce1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E, member 1.
    
 0.679
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.