STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104935487Plexin-B3 isoform X1. (1902 aa)    
Predicted Functional Partners:
SEMA4D
Semaphorin-4D isoform X1.
    
 0.669
LOC104930783
Semaphorin-4E.
    
 0.641
LOC104929643
Semaphorin-4E.
    
 0.641
LOC104929596
semaphorin-4E.
    
 0.641
nrp1
Neuropilin-1 isoform X1.
    
 0.635
sema5a
Semaphorin-5A.
    
0.625
rnd3
Rho-related GTP-binding protein RhoE.
    
 0.583
RND1
Rho-related GTP-binding protein Rho6.
    
 0.583
LOC104932892
Rho-related GTP-binding protein Rho6.
    
 0.583
sema5b
Semaphorin-5B isoform X3.
    
 0.575
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.