STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104938903Ras-related protein Rab-40B-like. (292 aa)    
Predicted Functional Partners:
LOC104936337
Rab proteins geranylgeranyltransferase component A 1.
    
 0.618
rabggtb
Geranylgeranyl transferase type-2 subunit beta.
    
 0.614
mthfsd
Methenyltetrahydrofolate synthase domain-containing protein isoform X2.
   
    0.600
eloc
Elongin-C.
    
 
 0.591
Rilpl2
RILP-like protein 2.
    
 
 0.589
rab3il1
Guanine nucleotide exchange factor for Rab-3A isoform X1.
    
 0.576
rab3ip
Rab-3A-interacting protein isoform X1.
    
 0.576
exoc4
Exocyst complex component 4 isoform X1.
    
 0.561
exoc1
Exocyst complex component 1 isoform X1.
   
 0.552
exoc7
Exocyst complex component 7.
   
 0.545
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.