STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppcsPhosphopantothenate---cysteine ligase (ATP). (320 aa)    
Predicted Functional Partners:
ppcdc
Phosphopantothenoylcysteine decarboxylase isoform X1.
    
 0.991
LOC104925575
Pantothenate kinase 3 isoform X1.
     
 0.969
mavs
Type II pantothenate kinase.
     
 0.969
coasy
Phosphopantetheine adenylyltransferase / dephospho-CoA kinase.
  
 0.963
pank4
Bifunctional protein PANK4.
     
 0.949
LOC104939492
Cytochrome c oxidase assembly protein subunit 19.
    
 0.889
kyat1
Kynurenine--oxoglutarate transaminase 1.
  
  0.825
cth
Cystathionine gamma-lyase.
   
 
 0.809
got1
Aspartate aminotransferase, cytoplasmic.
    
  0.801
LOC109137396
Aspartate aminotransferase, cytoplasmic isoform X1.
    
  0.801
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.