STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d32Protein broad-minded isoform X1. (1302 aa)    
Predicted Functional Partners:
LOC104920468
Ubiquitin-conjugating enzyme E2 variant 3.
      
 0.693
cfap20
Cilia- and flagella-associated protein 20.
    
 
 0.687
wdpcp
WD repeat-containing and planar cell polarity effector protein fritz homolog isoform X1.
   
  
 0.609
fam149b1
Protein FAM149B1 isoform X1.
    
 
 0.504
sclt1
Sodium channel and clathrin linker 1.
      
 0.468
cvih3orf67
Uncharacterized protein C3orf67 homolog isoform X1.
    
 
 0.401
wdr90
WD repeat domain 90.
    
 
 0.401
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.