STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104932139Histone-binding protein RBBP4. (427 aa)    
Predicted Functional Partners:
lin37
Protein lin-37 homolog.
    
 0.992
lin9
Protein lin-9 homolog isoform X1.
    
 0.991
arid4b
AT-rich interactive domain-containing protein 4B isoform X1.
   
 0.987
arid4a
AT-rich interactive domain-containing protein 4A.
   
 0.987
lin52
Protein lin-52 homolog isoform X2.
   
 0.984
lin54
Protein lin-54 homolog.
   
 0.982
LOC104939253
Uncharacterized protein LOC104939253 isoform X1.
   
 0.982
mybl2
Myb-related protein B isoform X1.
   
 0.959
eed
Polycomb protein EED.
   
 0.941
hat1
Histone acetyltransferase type B catalytic subunit isoform X1.
   
 0.932
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.