STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snf8SNF8 subunit of ESCRT-II. (290 aa)    
Predicted Functional Partners:
vps36
Vacuolar protein-sorting-associated protein 36.
   
 0.999
LOC104940299
Charged multivesicular body protein 6.
    
 0.971
chmp6
Charged multivesicular body protein 6.
    
 0.971
vps28
Vacuolar protein sorting-associated protein 28 homolog.
   
 0.937
cxiih17orf75
Protein Njmu-R1.
    
 0.936
chmp2a
Charged multivesicular body protein 2A.
   
 0.925
chmp3
Charged multivesicular body protein 3.
    
 0.904
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1.
     
 0.884
tm9sf1
Transmembrane 9 superfamily member 1.
    
 0.875
tsg101
Tumor susceptibility gene 101 protein.
    
 0.858
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.