STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vgll4Transcription cofactor vestigial-like protein 4 isoform X1. (345 aa)    
Predicted Functional Partners:
yap1
Transcriptional coactivator YAP1.
    
 
 0.735
TEAD1
TEA domain transcription factor 1.
    
 
 0.645
LOC104933283
Transcriptional enhancer factor TEF-5-like.
    
 
 0.645
tead4
TEA domain transcription factor 4.
    
 
 0.645
LOC104918383
Transcriptional enhancer factor TEF-5.
    
 
 0.645
LOC104936262
Transcriptional enhancer factor TEF-1-like.
    
 
 0.645
nap1l1
Nucleosome assembly protein 1-like 1 isoform X1.
      
 0.616
pdzd2
PDZ domain containing 2.
      
 0.607
pim3
Proto-oncogene serine/threonine-protein kinase Pim-3.
      
 0.599
cenpt
Centromere protein T.
    
 
 0.578
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.